Genomics

Geographical source of SARS-CoV-2 sequence data

The world map and table below provide a snapshot of the number of SARS-CoV-2 raw sequences submitted by country.
The original source of data is the COVID-19 Data Portal statistics section.

	Country	Raw sequences submitted
1	USA	2,953,527
2	United Kingdom	2,651,771
3	Ireland	77,842
4	Switzerland	72,662
5	Portugal	43,860
6	Spain	41,545
7	Slovakia	39,140
8	Stonia	25,102
9	Norway	22,820
10	South Africa	17,981

VEO consortium reports

The VEO consortium (Versatile Emerging infectious disease Observatory) submits monthly reports to the European Commission on mutations and variation in publicly shared SARS-CoV-2 raw sequencing data.
You can browse all previous VEO reports in the table below.
If you would like to receive the VEO reports straight to your inbox, please send an email to veo.europe@erasmusmc.nl with ‘VEO COVID-19 Report’ in the subject line.

Report	News	Download
VEO Symposium 2022 report	News	Download report
14th report	News	Download report
13th report	News	Download report
12th report	News	Download report
11th report	News	Download report
10th report	News	Download report
9th report	News	Download report
8th report	News	Download report
7th report	News	Download report
6th report	News	Download report
5th report	News	Download report
4th report	News	Download report
3rd report	News	Download report
2nd report	News	Download report
1st report	News	Download report

Viral sequences

This section shows the samples sequenced from Severe acute respiratory syndrome coronavirus 2 (taxon: 2697049) in Spain.
These results are periodically retrieved from ENA.

Last update: 2026-06-10

Host sequences

This section shows studies related to COVID-19 containing host sequences sequenced in Spain and archived in the European Genome-Phenome Archive (EGA).
Note that each study can include more than one dataset.

These results are periodically manually retrieved from EGA.

EGA studies with Spanish partners

Study accession	Study title

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Other EGA Studies

Study accession	Study title

Genomic resources

NextSpain COVID-19 interactive epidemiological map

Developed by the Sequencing and Bioinformatics Services, FISABIO, and the Tuberculosis Genomics Unit, IBV-CSIC

NextSpain COVID-19 shows the results obtained from analysing complete genome sequences of SARS-CoV-2 deposited in GISAID or other publicly accessible databases. A large part of those sequences have been generated in the framework of the SeqCOVID genomic epidemiology of COVID-19 in Spain consortium. Still many others have been contributed by differnet groups across Spain with their resources. The analyses are performed with the NextStrain engine and the epidemiological map is built with this code.

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Interactive epidemiological map of SARS-CoV-2 clinical circuit in Andalusia

Developed by the Clinical Bioinformatics Area, FPS

This map is part of the SARS-CoV-2 whole genome sequencing clinical circuit in Andalusia, which was created as a response by the Andalusian Health Service to a recommendation published by the Public Health Commission of the Interterritorial Council for the integration of genome sequencing in the SARS-CoV-2 surveillance in the approach to Personalised Medicine in COVID-19. The clinical circuit and the map is based upon a previous project funded by the Andalusian Health System: Sequencing of the SARS-CoV-2 virus genome for the monitoring and management of the Covid-19 epidemic in Andalusia and the rapid generation of prognostic and response to treatment biomarkers. The project included the 16 leading tertiary hospitals in Andalusia, three research centres with genome sequencing facilities (IBIS, Genyo and CABIMER) and the Bioinformatics Clinical Area of FPS.

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